Archive for Neuron Transistor

The first Neuron Transistor

After working more than 4 years this is the first image

The project will change the world

This is what Thottagh only to run

This is what Thottagh only to run

Plug legs were made of gold

Plug legs were made of gold

Like a normal transistor, but he has more legs

Like a normal transistor, but he has more legs

Yes, this is the size you believe

Yes, this is the size you believe

Nanowire transistor arrays for mapping neural circuits in acute brain slices

Revealing the functional connectivity in natural neuronal networks is central to understanding circuits in the brain. Here, we show that silicon nanowire field-effect transistor (Si NWFET) arrays fabricated on transparent substrates can be reliably interfaced to acute brain slices. NWFET arrays were readily designed to record across a wide range of length scales, while the transparent device chips enabled imaging of individual cell bodies and identification of areas of healthy neurons at both upper and lower tissue surfaces. Simultaneous NWFET and patch clamp studies enabled unambiguous identification of action potential signals, with additional features detected at earlier times by the nanodevices. NWFET recording at different positions in the absence and presence of synaptic and ion-channel blockers enabled assignment of these features to presynaptic firing and postsynaptic depolarization from regions either close to somata or abundant in dendritic projections. In all cases, the NWFET signal amplitudes were from 0.3–3 mV. In contrast to conventional multielectrode array measurements, the small active surface of the NWFET devices, ∼0.06 μm2, provides highly localized multiplexed measurements of neuronal activities with demonstrated sub-millisecond temporal resolution and, significantly, better than 30 μm spatial resolution. In addition, multiplexed mapping with 2D NWFET arrays revealed spatially heterogeneous functional connectivity in the olfactory cortex with a resolution surpassing substantially previous electrical recording techniques. Our demonstration of simultaneous high temporal and spatial resolution recording, as well as mapping of functional connectivity, suggest that NWFETs can become a powerful platform for studying neural circuits in the brain.

Neuron-Silicon Junction or Brain-Computer Junction?

I first observed nerve cells and silicon wafers while working on two distinctly different degree dissertations in my laboratory at the University of Ulm in 1984. At the time, we were studying how the electrical activity of nerve cells influenced fluorescent dyesand the effects of artificial membrane layers on microscopic silicon electrodes. Enthused by the results, I used the occasion of the 20th Winter Seminar “Molecules, Information and Memory” presented by Manfred Eigen in January 1985 to present a paper entitled Brain on Line? The Feasibility of a Neuron-Silicon Junction, Read more

What is a Neuron Transistor ?

neuronchip

The term “neuron” comes from the name used to describe the conducting nerve cell of the brain, spinal cord, and nerves. Human neurons consist of a cell body containing a nucleus, several nerve processes, and an axon or nerve fiber. The association between the Neuron Chip and the human nerve cell is the similarity of the three parts of a human nerve cell and the Neuron transistor

ip’s three, 8-bit CPUs. One C P U handles protocol for communication to and from the chip, another handles the application progr

am, and a third handles input/output information.

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The idea is to use a (regular) 2-dim array of quantum dots (QD) to form nodal ponts in a conductive network. Each QD (node) is vertically connected to a bistable resonanant tunneling diode (formed in the “substrate”), and to a driving current injection line (bias line). Each node then forms a non-linear (bistable) element, and the network dynamics is governed by equations describing neural networks. The systems represents (in principle, at least) a direct implementation of nanoscale technology for computational purposes, without first building (nanoscale) transistors, logic gates, etc.

A Chip for a Neuron


The MIT Technology Review describes the research behind the first direct electrical interface between a semiconductor device and an individual mammalian nerve cell:

Context: The neurons of the mammal brain are hard to study, even when they’re isolated in the lab. For more than a decade, scientists have analyzed the large neurons of leeches and snails by linking them directly to silicon chips that record their electrical activity. But mammalian neurons are smaller, and though they can be grown on silicon, the resulting signals are typically too weak to yield useful data. The electrical activity of mammalian brain cells can be read with electrodes, but that can be imprecise and requires careful preparation steps.

Moritz Voelker and Peter Fromherz at the Max Planck Institute for Biochemistry have now designed the first computer chip that can record the firing of mammalian neurons, though so far only in a petri dish.

Methods and Results: As a neuron fires, the voltage across it changes, so a neuron on a chip affects how transistors underneath it conduct electricity. But in chips with conventional transistor designs, there’s so much naturally occurring noise that it swamps neural signals. So Voelker and Fromherz changed the geometry of the transistors to suit the electrical properties of living neurons. They buried the conducting channels of their transistors a few nanometers deeper than usual, making the transistor more sensitive to the low voltages and firing speeds of neurons. The transistors could detect the signal of an ?individual rat neuron in a group, without the elaborate sample preparation that ?conventional electrodes require. What’s more, the tran?sistors are significantly smaller than individual neurons and could in principle provide information on how subsections of a neuron behave.

Frequency dependent signal transfer in neuron transistors

Nerve cells are attached to open, metal-free gates of field-effect transistors submersed in electrolyte. The intracellular voltage is modulated by small ac signals from 0.1 Hz to 5000 Hz using a patch-clamp technique. The source-drain current is affected in amplitude and phase through a modulation of the extracellular voltage in the cleft between transistor and cell. The ac-signal transfer is evaluated on the basis of linear response theory. We use the model of a planar two-dimensional cable which consists of the core of an electrolyte sandwiched between the coats of a cell membrane and silicon dioxide of the transistor surface. Comparing experiment and model we obtain the resistances of core and coat, i.e., of the seal of cell and surface and of the attached membrane. The resistance of the membrane varies in different junctions. It may be lowered by two orders of magnitude as compared with the free membrane. This drop of the membrane resistance correlates with an enhancement of the seal resistance, i.e., with closer adhesion. The linear ac-transfer functions are used to compute the signal transfer of an action potential. The computed response is in good agreement with the observations of excited nerve cells on transistors.
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The electrical coupling of randomly migrating neurons from rat explant brain-stem slice cultures to the gates of non-metallized field-effect transistors (FETs) has been investigated. The objective of our work is the precise interpretation of extracellular recorded signal shapes in comparison to the usual patch-clamp protocols to evaluate the possible use of the extracellular recording technique in electrophysiology. The neurons from our explant cultures exhibited strong voltage-gated potassium currents through the plasma membrane. With an improved noise level of the FET set-up, it was possible to record individual extracellular responses without any signal averaging. Cells were attached by patch-clamp pipettes in voltage-clamp mode and stimulated by voltage step pulses. The point contact model, which is the basic model used to describe electrical contact between cell and transistor, has been implemented in the electrical simulation program PSpice. Voltage and current recordings and compensation values from the patch-clamp measurement have been used as input data for the simulation circuit. Extracellular responses were identified as composed of capacitive current and active potassium current inputs into the adhesion region between the cell and transistor gate. We evaluated the extracellular signal shapes by comparing the capacitive and the slower potassium signal amplitudes. Differences in amplitudes were found, which were interpreted in previous work as enhanced conductance of the attached membrane compared to the average value of the cellular membrane. Our results suggest rather that additional effects like electrodiffusion, ion sensitivity of the sensors or more detailed electronic models for the small cleft between the cell and transistor should be included in the coupling model.

Nerve/Chip Hybrid


Nervy chip may open window into brain
Peter Weiss
In a feat that blurs the lines between science fiction and reality, researchers in Germany have combined living brain cells and semiconductor electronics in a single circuit.
Plastic posts on a microchip corral a snail neuron above a transistor.Fromherz
The new microdevice, which uses snail neurons because they are conveniently large, represents a step toward more-complex hybrid circuits, says Peter Fromherz, leader of the work. Such circuits would include up to hundreds of neurons and may enable neuroscientists to directly probe the physiological processes of memory and learning, he says. ..
Nervy chip may open window into brain
Peter Weiss
In a feat that blurs the lines between science fiction and reality, researchers in Germany have combined living brain cells and semiconductor electronics in a single circuit.
The new microdevice, which uses snail neurons because they are conveniently large, represents a step toward more-complex hybrid circuits, says Peter Fromherz, leader of the work. Such circuits would include up to hundreds of neurons and may enable neuroscientists to directly probe the physiological processes of memory and learning, he says.
“We want to make a biological neural network . . . and then supervise it, record [from] it, and look at what’s going on,” says Fromherz.
Finding ways of directly linking semiconductor components and cells also may further medical and technological applications, he notes. Teams in other labs are trying to meld brain tissue with microchips to make implants that can restore sight and computers that exploit nerve cells’ information-processing abilities.
But those teams connect cells to circuits by impaling the cells with needle-like electrodes, Fromherz notes. That’s how scientists recently commandeered a slice of a lamprey’s brain to control a light-sensitive robot (SN: 11/11/00, p. 309).
Fromherz and Günther Zeck, both of the Max Planck Institute for Biochemistry in Munich, describe their snail-neuron-based circuit in the Aug. 28 Proceedings of the National Academy of Sciences.
To make their circuit, the duo patterned transistors onto a silicon wafer, placed snail neurons onto the surface, and then immersed the device in a cell-sustaining broth. The team also has begun experimenting with rat neurons. While those cells are smaller and harder to work with, they’re more like human neurons than snail neurons are.
References:
Zeck, G., and P. Fromherz. 2001. Noninvasive neuroelectronic interfacing with synaptically connected snail neurons immobilized on a semiconductor chip. Proceedings of the National Academy of Sciences 98(Aug. 28):10457-10462. Abstract available at http://www.pnas.org/cgi/content/abstract/98/18/10457.
Further Readings:
Perkins, S. 2000. Lamprey cyborg sees the light and responds. Science News 158(Nov. 11):309. Available at http://www.sciencenews.org/20001111/fob4.asp.
Sources:
Peter FromherzDepartment of Membrane and NeurophysicsMax Planck Institute for BiochemistryD-82152 Martinsried, MunichGermany
Gunther ZeckDepartment of Membrane and NeurophysicsMax Planck Institute for BiochemistryD-82152 Martinsried, MunichGermany

Biomorphic Analog Pulse-Coupled Neural Circuits

These circuits are potentially useful for invariant pattern recognition.
NASA’s Jet Propulsion Laboratory, Pasadena, California
Analog electronic circuits that operate with pulsed input and output signals are undergoing development. The pulsing behavior of these circuits is modeled after a similar behavior, called “spiking,” that occurs in biological neural networks. In these circuits, the pulse times and/or the pulse-repetition rates can convey information. These circuits are intended especially for use in high-speed artificial neural networks, which, like the brains of animals that have vision, would process image data to effect invariant pattern recognition. (As used here, “invariant”signifies that the ability to recognize patterns would not be adversely affected by such effects as translation, rotation, distortion, changes in scale, or changes in brightness.)
Figure 1 depicts an example of input/output behavior according to one mathematical model of a biomorphic spiking neuron. Starting from the beginning of a pulse cycle, a membrane potential rises at rate that decays exponentially until the potential passes a time-varying threshold, at which point the neuron sends a spike along its axon. At the instant of the spike, the membrane potential returns to a resting level from which the cycle starts anew. If the threshold, the resting potential, or the rate of rise of the membrane potential is modulated, then the pulse-repetition rate (also called the “spiking frequency” or the “firing rate”) of the neuron is changed.
By locally connecting neurons like this one into an array in which the axons of neighbors would transmit their spike trains via synapto-dendritic connections that would modulate the thresholds, one could construct a complex processing network. In a computational simulation, such a network has been shown to be capable of invariant mapping of binary patterns.
The invariance of the mapping is a result of encoding images in time rather than space. In particular, if the same image is fed as input to a different set of pixels but the same spatial relationships are maintained among parts of the image, the temporal representation of the image remains the same and the mapping is invariant to translation. Invariance with respect to brightness is achieved partly by recognizing that greater brightness is represented simply by a uniform increase in the average firing rates of all affected neurons.
The upper part of Figure 2 depicts a developmental spiking-neuron circuit. The clock voltage source (Vclk) pumps charge through a subthreshold biased transistor (M1) onto the gate capacitance of transistor M2, the gate potential of which represents the membrane potential. The current source constituted by the clock and M1 is intentionally made fairly poor (i.e., is made to have low resistance) in order to obtain a nonlinear buildup of membrane potential. When the membrane potential becomes high enough to pull M3 out of its linear current-vs.-voltage region, the voltage at the swing node rapidly decreases as M2 pulls the node toward ground. The low voltage on the swing node then triggers the inverter formed with M4 and M5 to go high, and the inverter potential is digitally buffered to the output terminal. The clocked switching transistor M7 latches the voltage output on the noncharging portion of the cycle of the current pump at M1. M8 and M9 are sized to constitute an inverter that triggers at a relatively high dc potential to insure an adequate spike amplitude before the discharge transistor M6 is activated. When M6 is switched on, all charge at the membrane is drained to ground (zero potential) or, alternatively, to a source of nonzero resting potential connected to the source terminal of M6. When the membrane potential falls, M2 shuts down and the swing node is pulled high again as M3 returns to its linear region. This change in the swing node returns the output to low, ending the spike and switching off the discharge transistor at M6.
The lower part of Figure 2 shows a synapto-dendritic input circuit connected to the swing node of a spiking neuron. In a locally connected network, there could be eight input circuits like this one for coupling the outputs from eight nearest-neighbor neurons as inputs to the affected neuron. Transistor Ms1 sets the gain of the coupling, while transistor Ms2 controls the timing. Essentially, the spike from a neighboring neuron injects charge onto the gate of Ms3 through Ms1. This charge then slowly leaks away via Ms2 to produce a decaying exponential current response through Ms3. This current modulates the threshold of the spiking neuron by pulling M3 closer to saturation, thereby enabling a decreased membrane potential to trigger a spike.

Figure 1. The Interval Between Spikes and the Buildup of Membrane Potential can be modulated by modulating the threshold potential.
Figure 2. These Analog Neural Circuits are designed to exhibit spiking behavior that approximates that of figure 1.

This work was done by Tyson Thomas of Caltech for NASA’s Jet Propulsion Laboratory. For further information, access the Technical Support Package (TSP) free on-line at www.nasatech.com under the Electronic Components and Systems category.
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